publications

2024

  1. Class II HLA-DRB4 is a predictive biomarker for survival following immunotherapy in metastatic non-small cell lung cancer
    Cindy Y Jiang, Lili Zhao, Michael D Green, and 7 more authors
    Scientific reports, 2024
  2. The signature of a T-cell response to KSHV persists across space and time in individuals with epidemic and endemic KS from Uganda
    Shashidhar Ravishankar, Andrea MH Towlerton, Peter Mooka, and 8 more authors
    bioRxiv, 2024
  3. Geographic EBV variants confound disease-specific variant interpretation and predict variable immune therapy responses
    Edward L Briercheck, Shashidhar Ravishankar, Elshafa Hassan Ahmed, and 8 more authors
    Blood Advances, 2024

2023

  1. Role of HLA-DRB4 as a biomarker for endocrine toxicity and survival outcomes after immunotherapy in metastatic non-small cell lung cancer.
    Cindy Jiang, Shashidhar Ravishankar, Lili Zhao, and 7 more authors
    2023

2022

  1. Serial analysis of the T-cell receptor β-chain repertoire in people living with HIV reveals incomplete recovery after long-term antiretroviral therapy
    Andrea MH Towlerton, Shashidhar Ravishankar, David G Coffey, and 2 more authors
    Frontiers in immunology, 2022
  2. The first complete genome of the simian malaria parasite Plasmodium brasilianum
    Marko Bajic, Shashidhar Ravishankar, Mili Sheth, and 8 more authors
    Scientific Reports, 2022

2021

  1. Targeted deep amplicon sequencing of antimalarial resistance markers in Plasmodium falciparum isolates from Cameroon
    Mariangela L’Episcopia, Julia Kelley, Bruna G Djeunang Dongho, and 8 more authors
    International Journal of Infectious Diseases, 2021
  2. RNA helicase, DDX3X, is actively recruited to sites of DNA damage in live cells
    Michael J Cargill, Alicia Morales, Shashidhar Ravishankar, and 1 more author
    DNA repair, 2021

2019

  1. Evolution and genetic diversity of the k13 gene associated with artemisinin delayed parasite clearance in Plasmodium falciparum
    M Andreı́na Pacheco, Esha R Kadakia, Zainab Chaudhary, and 7 more authors
    Antimicrobial Agents and Chemotherapy, 2019

2018

  1. Mapping-free variant calling using haplotype reconstruction from k-mer frequencies
    Peter A Audano, Shashidhar Ravishankar, and Fredrik O Vannberg
    Bioinformatics, 2018
  2. Next-generation sequencing and bioinformatics protocol for malaria drug resistance marker surveillance
    Eldin Talundzic, Shashidhar Ravishankar, Julia Kelley, and 8 more authors
    Antimicrobial Agents and Chemotherapy, 2018
  3. Next-generation Sequence-analysis Toolkit (NeST): A standardized bioinformatics framework for analyzing Single Nucleotide Polymorphisms in next-generation sequencing data
    Shashidhar Ravishankar, Sarah E Schmedes, Dhruviben S Patel, and 4 more authors
    bioRxiv, 2018
  4. TARGETED DEEP AMPLICON SEQUENCING ANALYSIS OF KELCH 13 AND CYTOCHROME B GENES IN PLASMODIUM FALCIPARUM ISOLATES FROM ERITREA
    Mariangela L’Episcopia, Michela Menegon, Carlo Severini, and 8 more authors
    In AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, 2018

2017

  1. TLR-exosomes exhibit distinct kinetics and effector function
    Swetha Srinivasan, Michelle Su, Shashidhar Ravishankar, and 4 more authors
    Scientific Reports, 2017
  2. First full draft genome sequence of Plasmodium brasilianum
    Eldin Talundzic, Shashidhar Ravishankar, Vishal Nayak, and 8 more authors
    Genome Announcements, 2017
  3. First full draft genome sequence of Plasmodium brasilianum. Genome Announc 5: e01566-16
    E Talundzic, S Ravishankar, V Nayak, and 8 more authors
    2017

2015

  1. Xomannotate: analysis of heterogeneous and complex exome-a step towards translational medicine
    Asoke K Talukder, Shashidhar Ravishankar, Krittika Sasmal, and 5 more authors
    PLoS One, 2015